NeuroDesk - A flexible, scalable, and easy to use data analysis environment for reproducible neuroimaging
What are you doing, for whom, and why? Neurodesk provides a containerised data analysis environment to facilitate reproducible analysis of neuroimaging data.
What makes your project special and exciting? Analysis pipelines for neuroimaging data typically rely on specific versions of packages and software, and are dependent on their native operating system. These dependencies mean that a working analysis pipeline may fail or produce different results on a new computer, or even on the same computer after a software update. Neurodesk provides a platform in which anyone, anywhere, using any computer can reproduce your original research findings given the original data and analysis code.
How to get started? Head over to https://neurodesk.github.io/ and try it out :)
Where to find key resources? https://neurodesk.github.io/docs/
Add your favorite workflow to our workflow collection: https://neurodesk.github.io/tutorials/ and benchmark how long it takes to run on Neurodesk vs your standard setup
Add your favorite tools to Neurodesk as a new container: https://neurodesk.github.io/developers/new_tools/add_tool/ (already existing tools: https://github.com/orgs/NeuroDesk/packages)
Test Neurodesk for your work - let us know what works and what doesn’t work :) https://github.com/NeuroDesk/neurodesk.github.io/discussions
Test Neurodesk on free cloud tiers of amazon AWS, google cloud, Alibaba
Find a way how we can run automatic unit tests of our workflow documentation
Build a cross-platform graphical user interface for launching and managing neurodesk (Go/Electron) app
issue one: Test Neurodesk for your work - let us know what works and what doesn’t work :) https://github.com/NeuroDesk/neurodesk.github.io/discussions
issue two: Add your favorite workflow to our workflow collection: https://neurodesk.github.io/tutorials/
containers, github workflows
Project contributors will be listed on the website and be part of publications originating from the project.
coding_methods, data_management, documentation, method_development, pipeline_development, visualization
data_visualisation, diffusion, EEG_EventRelatedResponseModelling, EEG_source_modelling, MR_methodologies, reproducible_scientific_methods, tractography
AFNI, ANTs, BIDS, Brainstorm, CPAC, Datalad, DIPY, FieldTrip, fMRIPrep, Freesurfer, FSL, Jupyter, MNE, MRtrix, Nipype, NWB, SPM, other
containerization, documentation, Java, Python, shell_scripting, unix_command_line, html_css
DWI, ECOG, EEG, fMRI, MEG, MRI, PET
0_no_git_skills, 1_commit_push, 2_branches_PRs, 3_continuous_integration
Hi @Brainhack-Global/project-monitors: my project is ready!