DSST defacing pipeline

Title

DSST defacing pipeline

Leaders

Arshitha Basavaraj Twitter: arshitha94 Slack: arsh

Collaborators

• Eric Earl @ericearl
• Adam Thomas @agt24
• Dustin Moraczewski @dmoracze

Brainhack Global 2022 Event

Brainhack Washington DC

Project Description

• What are you doing, for whom, and why?
• What makes your project special and exciting?
• How to get started?
• Where to find key resources?

Link to project repository/sources

https://github.com/nih-fmrif/dsst-defacing-pipeline

Goals for Brainhack Global

• Test existing pipeline on openly available dataset
• Revise the README to be more user-friendly
• Flesh out types of failures and suggested fixes

Good first issues

1. issue one: Test on anatomical scans in Myconnectome dataset and revise instructions on README

Communication channels

https://join.slack.com/t/brainhack-dc/shared_invite/zt-yi8noylv-wfYVWiqJCNDkRmJflQy~2A

Skills

• bash basics

Onboarding documentation

No response

What will participants learn?

• Testing a pipeline
• Contributing to open source project
• git
• documentation

Data to use

No response

Number of collaborators

1

Credit to collaborators

Project contributors will be acknowledged on the Github repo.

Image

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Type

documentation, pipeline_development, visualization

Development status

1_basic structure

Topic

reproducible_scientific_methods

Tools

AFNI, FSL, Jupyter

Programming language

Python

Modalities

not_applicable

Git skills

0_no_git_skills, 1_commit_push, 3_continuous_integration

Anything else?

No response

Things to do after the project is submitted and ready to review.

• Add a comment below the main post of your issue saying: Hi @brainhackorg/project-monitors my project is ready!
• Twitter-sized summary of your project pitch.