Guidelines for tractography in primates
Title
Guidelines for tractography in primates
Leaders
Mélina Cordeau (https://twitter.com/CordeauMelina)
Collaborators
David Meunier Julien Sein Arnaud Le Troter https://mattermost.brainhack.org/brainhack/channels/bhg22-marseille-orga
Brainhack Global 2022 Event
Brainhack Marseille
Project Description
Create guidelines i.e. summarize all the important things to know, step by step, to make a good tractogram edition for non-human primate species. A document that would bring together all the parameters that are similar and those that differ between species for preprocessing and tractography. We will focus on marmosets, macaques, baboons and chimpanzees.
Link to project repository/sources
https://colab.research.google.com/drive/1ZABRmtdCtYSdnUxdOiIatfU6VE_hq7iw#scrollTo=gJr_9dXGpJ05
Goals for Brainhack Global
#1. Definition of guidelines based on human best practices #2. Creation of a parameter file for each primate species #3. Implementation of a corresponding Wiki in PRIME-RE platform
Good first issues
- BATMAN tutorial: https://osf.io/fkyht/
- QSIPREP and QSIRECON: https://qsiprep.readthedocs.io/en/latest/
- PRIME-RE wiki: https://github.com/PRIME-RE/prime-re.github.io/wiki/Diffusion-processing
Communication channels
https://mattermost.brainhack.org/brainhack/channels/bhg22-marseille-nhpdwi
Skills
- DWI data skills: 75%
- Python coding: 25%
- Be friendly, tolerant, and inclusive: 100%
Onboarding documentation
No response
What will participants learn?
Participants will exchange their expertise, learn to recognize/implement the best ways to proceed in order to achieve a correct tractogram in non-human primates.
Data to use
No response
Number of collaborators
4
Credit to collaborators
Participants will be credited on the Wiki page for their contributions.
Image
Type
documentation
Development status
0_concept_no_content
Topic
diffusion, tractography
Tools
Freesurfer, FSL, MRtrix
Programming language
Python
Modalities
DWI
Git skills
0_no_git_skills
Anything else?
No response
Things to do after the project is submitted and ready to review.
- Add a comment below the main post of your issue saying:
Hi @brainhackorg/project-monitors my project is ready! - Twitter-sized summary of your project pitch.