Deriving Resting State Networks and Observing their Behavior Across Age

Title

Deriving Resting State Networks and Observing their Behavior Across Age

Leaders

Kimberly Rogge-Obando

Collaborators

Terra Lee

Brainhack Global 2023 Event

BrainHack Vanderbilt

Project Description

Since their discovery, resting state networks have elucidated our understanding of cognitive function such as emotion processing, working memory, and daydreaming. Additionally, a collective of scientists believe resting state networks may be a possible biomarker of mental disorders. However, before we can confirm resting state networks point to a characteristic of mental disorders it is important to model how they change across age. Many studies have identified that age does influence the connectivity of resting state networks however which brain regions within resting state networks change specifically needs to be further understood. The goal of this project is to compare methods of how resting state network information are retrieved and potentially model how they change across age. Anyone is welcome to join and will have the opportunity to learn common practices to derive resting state networks. Individuals are asked to have FSL and Matlab on their computers, but this is not a requirement to join however it may limit their contribution.

https://drive.google.com/drive/folders/1Gd0Ra4BYukWS39978vVewpwzNDBOE7km?usp=sharing

Goals for Brainhack Global

Goal 1 : Determine if dual regression on matlab gives similar results of FSL dual regression. Level of difficulty 1-2

Tasks to complete goal 1

Goal 2: Determine how resting state networks change across age. Level of difficulty 3

Tasks to complete goal 2

Good first issues

  1. Download FSL onto your computer and look into FSL melodic and dual_regression https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FslInstallation

  2. Download Afni on your computer https://afni.nimh.nih.gov/pub/dist/doc/htmldoc/background_install/install_instructs/index.html

Communication channels

#rage channel on https://discord.gg/5vy8fTWQ

Skills

Neuroimaging-Beginner MATLAB-Begninner FSL-Begninner- Intermediate

Willingness to contribute to science communication part of the project, creating power point slides etc.

Onboarding documentation

(https://drive.google.com/drive/folders/1Gd0Ra4BYukWS39978vVewpwzNDBOE7km?usp=sharing )

What will participants learn?

This project is perfect for beginners in fMRI resting state network analysis.

Things participants will learn.

-How to conduct Melodic ICA and eyeball resting state networks -Derive subject specific resting state network spatial maps and time series -Use FSL randomise and dual_regression code -Will learn how to use fsl randomise with co-variates that may transfer over to them investigating resting state networks across age or other variables of interest -Gain critical skills in team collaboration

Data to use

We will use a subset of the NKI -Rockland Sample dataset .

https://fcon_1000.projects.nitrc.org/indi/enhanced/

Nooner et al, (2012). The NKI-Rockland Sample: A model for accelerating the pace of discovery science in psychiatry. Frontiers in neuroscience 6, 152.

Number of collaborators

4

Credit to collaborators

Members of this team names will be listed on the code we upload to GitHub. They will also have the opportunity to join our formal NKI-rockland team as were in the process of finishing up a side project that is partially relevant to this project.

Image

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Type

coding_methods

Development status

0_concept_no_content

Topic

MR_methodologies

Tools

AFNI, FSL

Programming language

Matlab, shell_scripting

Modalities

fMRI

Git skills

0_no_git_skills

Anything else?

This will be a perfect opportunity for beginners using fMRI data! Look forward to meeting you!

Things to do after the project is submitted and ready to review.


Date
Jan 1, 0001 12:00 AM