Physiological derivatives BIDS proposal
Title
Physiological derivatives BIDS proposal
Leaders
Marie-Eve Picard email: physiopy@gmail.com Github Username: me-pic, Discord Username: me_pic (Marie-Eve Picard (she/her)),
Collaborators
Mary Miedema, Github Username: m-miedema
Brainhack Global 2023 Event
BrainHack Vanderbilt
Project Description
Physiopy is a community dedicated to developing solutions for handling physiological data acquired in neuroimaging setups. Currently, physiopy supports and maintains phys2bids , a library that standardizes raw physiological data in accordance with the Brain Imaging Data Structure (BIDS). The community is also developing and managing other libraries like peakdet (processing and analysing), Phys2Denoise (producing physiological regressors for neuroimaging denoising), and PhysioQC (quality control). All those libraries produce a bunch of different derivatives. However, the derivatives structure and requirements for physiological data (i.e. cardiac, respiratory, blood pressure, etc.) are not yet covered by the BIDS specification. With this project, we are hoping to start a discussion around an eventual BIDS proposal on physiological derivatives.
This project does not require coding skills to join. If you are enthusiastic about physiological data, BIDS, both, or just a curious person, we’re happy to have you on board!
Link to project repository/sources
https://github.com/orgs/physiopy
Goals for Brainhack Global
Open discussion on how to BIDSify physiological data derivatives (i.e. preprocessed data, peaks, troughs, rvt, hrv, etc.)
Good first issues
Come and join the discussion! https://github.com/orgs/physiopy/projects/3/
Communication channels
#bids_derivatives channel on https://discord.gg/GyeeVbYC
Skills
- Physiological data: cardiac, respiratory, skin conductance etc. [all levels]
- BIDS standards: intermediate/advanced
- Data management: all levels
- github: all levels
- python: intermediate/advanced
Onboarding documentation
No response
What will participants learn?
Participants will learn about BIDS standards, and derivatives management.
Data to use
No response
Number of collaborators
1
Credit to collaborators
Contributors are welcome to participate in drafting the physiological derivatives BIDS Extension Proposal (BEP), and be listed among the authors.
Image
Type
data_management
Development status
0_concept_no_content
Topic
physiology
Tools
BIDS
Programming language
not_applicable
Modalities
other
Git skills
0_no_git_skills
Anything else?
No response
Things to do after the project is submitted and ready to review.
- Add a comment below the main post of your issue saying:
Hi @brainhackorg/project-monitors my project is ready! - Twitter-sized summary of your project pitch.